| Rank | Name | Team | Time |
| 1 | Markus Eibegger | Magna-Ryanair | 6h12'36 |
| 2 | Daniel Moreno | Iberia - Communidad Valenciana | s.t. |
| 3 | Alexey Lutsenko | MTN - World Bicycle Relief | s.t. |
| 4 | Antton Ibarguren | Die Berg Komt Er | s.t. |
| 5 | Julián Rodas | MTN - World Bicycle Relief | s.t. |
| 6 | Samuel Sánchez Gonzalez | Iberia - Communidad Valenciana | s.t. |
| 7 | David Arroyo | Die Berg Komt Er | s.t. |
| 8 | Kevin De Weert | Die Berg Komt Er | s.t. |
| 9 | Thomas Rohregger | Magna-Ryanair | s.t. |
| 10 | Sylvain Calzati | FC Barcelona - Estrella Damm | s.t. |
| 11 | Denis Menchov | FC Barcelona - Estrella Damm | s.t. |
| 12 | Tyron Giogieri | Die Berg Komt Er | s.t. |
| 13 | Andrii Bratashcuk | Die Berg Komt Er | s.t. |
| 14 | Marco Salas | Banco Nacional de Costa Rica | s.t. |
| 15 | Deiber Esquivel | Banco Nacional de Costa Rica | s.t. |
| 16 | Fabricio Ferrari | Mobil - Castrol Cycling | s.t. |
| 17 | Juan Mora | Mobil - Castrol Cycling | s.t. |
| 18 | David Boily | Alstom-RBC | s.t. |
| 19 | Alexander Gottfried | Team WWE | s.t. |
| 20 | Maky Roman | Mobil - Castrol Cycling | s.t. |
| 21 | Georgi Petrov Georgiev | Boeing-Vivacom ProCycling | s.t. |
| 22 | Joseph Dombrowski | Team WWE | s.t. |
| 23 | Jonathan Tiernan-Locke | Boeing-Vivacom ProCycling | s.t. |
| 24 | Pierre-Henri Lecuisinier | Alstom-RBC | s.t. |
| 25 | Sebastian Salas | Alstom-RBC | s.t. |
| 26 | Carl Naibo | Magna-Ryanair | s.t. |
| 27 | César Rojas Villegas | Banco Nacional de Costa Rica | s.t. |
| 28 | Stefan Ihlenfeldt | MTN - World Bicycle Relief | s.t. |
| 29 | Eduardo Gonzalo | FC Barcelona - Estrella Damm | s.t. |
| 30 | Francisco Perez Sanchez | Iberia - Communidad Valenciana | s.t. |
| 31 | Juan Pablo Valencia | Iberia - Communidad Valenciana | s.t. |
| 32 | Dominik Hrinkow | Magna-Ryanair | s.t. |
| 33 | Mikel Astarloza | Team WWE | s.t. |
| 34 | Bernardo Colex | Banco Nacional de Costa Rica | s.t. |
| 35 | Johan Esteban Chaves | Iberia - Communidad Valenciana | s.t. |
| 36 | Craig Lewis | MTN - World Bicycle Relief | s.t. |
| 37 | David De la Cruz | FC Barcelona - Estrella Damm | s.t. |
| 38 | Henry Raabe | Banco Nacional de Costa Rica | s.t. |
| 39 | David Bartl | FC Barcelona - Estrella Damm | s.t. |
| 40 | Francisco Anton Martin | Iberia - Communidad Valenciana | s.t. |
| 41 | Johann Rabie | MTN - World Bicycle Relief | s.t. |
| 42 | Dennis Van Niekerk | MTN - World Bicycle Relief | s.t. |
| 43 | Alex Ciocan | Mobil - Castrol Cycling | s.t. |
| 44 | Antonio Bucciero | Boeing-Vivacom ProCycling | s.t. |
| 45 | Angel Vicioso | Control Team | s.t. |
| 46 | Iban Mayo | Control Team | s.t. |
| 47 | Eugenio Alafaci | Mobil - Castrol Cycling | s.t. |
| 48 | Rob Britton | Boeing-Vivacom ProCycling | s.t. |
| 49 | Haimar Zubeldia | Control Team | s.t. |
| 50 | Óscar Pereiro Sio | Control Team | s.t. |
| 51 | Stefano Pirazzi | Mobil - Castrol Cycling | + 3'59 |
| 52 | Stefan Hristov | Boeing-Vivacom ProCycling | s.t. |
| 53 | Guillaume Boivin | Alstom-RBC | + 5'29 |
| 54 | Hayden Roulston | Team WWE | s.t. |
| 55 | Jorge Abreu | FC Barcelona - Estrella Damm | + 7'08 |
| 56 | Daniel Paulus | Magna-Ryanair | s.t. |
| 57 | Emanuele Rizza | Die Berg Komt Er | s.t. |
| 58 | Francisco Mancebo | Control Team | s.t. |
| 59 | Jordi Simon | FC Barcelona - Estrella Damm | s.t. |
| 60 | Laurent Didier | Team WWE | + 10'03 |
| 61 | James Lewis Perry | MTN - World Bicycle Relief | s.t. |
| 62 | Javier Chacon | Iberia - Communidad Valenciana | + 12'42 |
| 63 | Spas Gyurov | Boeing-Vivacom ProCycling | s.t. |
| 64 | Jamie Sparling | Boeing-Vivacom ProCycling | s.t. |
| 65 | Lawson Craddock | Mobil - Castrol Cycling | s.t. |
| 66 | Andreas Graf | Magna-Ryanair | s.t. |
| 67 | Clement Chevrier | Die Berg Komt Er | s.t. |
| 68 | Justo Mayo | Team WWE | s.t. |
| 69 | Jose Luis Cano | Banco Nacional de Costa Rica | + 14'10 |
| 70 | Loic Desirac | Alstom-RBC | s.t. |
| 71 | Bram Tankink | Team WWE | + 16'06 |
| 72 | Andreas Hofer | Magna-Ryanair | + 17'01 |
| 73 | Ryan Roth | Alstom-RBC | s.t. |
| 74 | Oscar Freire | Control Team | s.t. |
| 75 | Saïd Haddou | Alstom-RBC | + 21'07 |
| 76 | Robby Meul | Banco Nacional de Costa Rica | s.t. |
| Rank | Name | Team | Time |
| 1 | David Arroyo | Die Berg Komt Er | 25h20'37 |
| 2 | Daniel Moreno | Iberia - Communidad Valenciana | + 8 |
| 3 | Thomas Rohregger | Magna-Ryanair | + 53 |
| 4 | Julián Rodas | MTN - World Bicycle Relief | + 1'57 |
| 5 | Denis Menchov | FC Barcelona - Estrella Damm | + 1'59 |
| 6 | Deiber Esquivel | Banco Nacional de Costa Rica | + 2'21 |
| 7 | Maky Roman | Mobil - Castrol Cycling | + 2'58 |
| 8 | Georgi Petrov Georgiev | Boeing-Vivacom ProCycling | + 3'03 |
| 9 | Sebastian Salas | Alstom-RBC | + 3'53 |
| 10 | Joseph Dombrowski | Team WWE | + 4'32 |
| 11 | Stefan Ihlenfeldt | MTN - World Bicycle Relief | + 5'53 |
| 12 | Carl Naibo | Magna-Ryanair | + 7'06 |
| 13 | Eduardo Gonzalo | FC Barcelona - Estrella Damm | + 7'23 |
| 14 | Sylvain Calzati | FC Barcelona - Estrella Damm | + 7'27 |
| 15 | César Rojas Villegas | Banco Nacional de Costa Rica | + 7'33 |
| 16 | Marco Salas | Banco Nacional de Costa Rica | + 7'36 |
| 17 | Dominik Hrinkow | Magna-Ryanair | + 9'00 |
| 18 | Markus Eibegger | Magna-Ryanair | + 9'54 |
| 19 | Samuel Sánchez Gonzalez | Iberia - Communidad Valenciana | + 10'02 |
| 20 | Johan Esteban Chaves | Iberia - Communidad Valenciana | s.t. |
| 21 | Juan Pablo Valencia | Iberia - Communidad Valenciana | + 10'11 |
| 22 | Craig Lewis | MTN - World Bicycle Relief | + 10'19 |
| 23 | Fabricio Ferrari | Mobil - Castrol Cycling | + 10'20 |
| 24 | David De la Cruz | FC Barcelona - Estrella Damm | s.t. |
| 25 | David Boily | Alstom-RBC | + 10'30 |
| 26 | Pierre-Henri Lecuisinier | Alstom-RBC | s.t. |
| 27 | Bernardo Colex | Banco Nacional de Costa Rica | s.t. |
| 28 | Antton Ibarguren | Die Berg Komt Er | + 10'41 |
| 29 | Kevin De Weert | Die Berg Komt Er | s.t. |
| 30 | Mikel Astarloza | Team WWE | s.t. |
| 31 | Jonathan Tiernan-Locke | Boeing-Vivacom ProCycling | + 11'05 |
| 32 | Francisco Anton Martin | Iberia - Communidad Valenciana | + 11'29 |
| 33 | Rob Britton | Boeing-Vivacom ProCycling | + 11'42 |
| 34 | David Bartl | FC Barcelona - Estrella Damm | + 11'49 |
| 35 | Juan Mora | Mobil - Castrol Cycling | + 12'57 |
| 36 | Dennis Van Niekerk | MTN - World Bicycle Relief | + 13'40 |
| 37 | Henry Raabe | Banco Nacional de Costa Rica | + 14'57 |
| 38 | Tyron Giogieri | Die Berg Komt Er | + 21'19 |
| 39 | Jorge Abreu | FC Barcelona - Estrella Damm | + 22'06 |
| 40 | Johann Rabie | MTN - World Bicycle Relief | + 24'12 |
| 41 | Eugenio Alafaci | Mobil - Castrol Cycling | + 24'20 |
| 42 | Alexey Lutsenko | MTN - World Bicycle Relief | + 25'36 |
| 43 | Javier Chacon | Iberia - Communidad Valenciana | + 27'48 |
| 44 | Andreas Graf | Magna-Ryanair | + 28'49 |
| 45 | Stefano Pirazzi | Mobil - Castrol Cycling | + 30'01 |
| 46 | Francisco Perez Sanchez | Iberia - Communidad Valenciana | + 32'20 |
| 47 | Daniel Paulus | Magna-Ryanair | + 32'44 |
| 48 | Stefan Hristov | Boeing-Vivacom ProCycling | + 33'06 |
| 49 | Andrii Bratashcuk | Die Berg Komt Er | + 35'40 |
| 50 | Antonio Bucciero | Boeing-Vivacom ProCycling | + 36'09 |
| 51 | Alex Ciocan | Mobil - Castrol Cycling | + 37'56 |
| 52 | Guillaume Boivin | Alstom-RBC | + 38'21 |
| 53 | Alexander Gottfried | Team WWE | + 38'51 |
| 54 | Clement Chevrier | Die Berg Komt Er | + 38'52 |
| 55 | Lawson Craddock | Mobil - Castrol Cycling | + 42'18 |
| 56 | Emanuele Rizza | Die Berg Komt Er | + 43'19 |
| 57 | Spas Gyurov | Boeing-Vivacom ProCycling | + 43'52 |
| 58 | Jamie Sparling | Boeing-Vivacom ProCycling | + 43'54 |
| 59 | Justo Mayo | Team WWE | + 44'19 |
| 60 | Laurent Didier | Team WWE | + 45'10 |
| 61 | James Lewis Perry | MTN - World Bicycle Relief | + 45'20 |
| 62 | Ryan Roth | Alstom-RBC | + 45'24 |
| 63 | Hayden Roulston | Team WWE | + 46'00 |
| 64 | Loic Desirac | Alstom-RBC | + 49'39 |
| 65 | Jose Luis Cano | Banco Nacional de Costa Rica | + 50'09 |
| 66 | Haimar Zubeldia | Control Team | + 51'33 |
| 67 | Andreas Hofer | Magna-Ryanair | + 51'50 |
| 68 | Iban Mayo | Control Team | + 53'04 |
| 69 | Óscar Pereiro Sio | Control Team | s.t. |
| 70 | Bram Tankink | Team WWE | + 53'39 |
| 71 | Robby Meul | Banco Nacional de Costa Rica | + 54'45 |
| 72 | Jordi Simon | FC Barcelona - Estrella Damm | + 58'55 |
| 73 | Angel Vicioso | Control Team | + 1h01'04 |
| 74 | Saïd Haddou | Alstom-RBC | + 1h06'49 |
| 75 | Francisco Mancebo | Control Team | + 1h08'12 |
| 76 | Oscar Freire | Control Team | + 1h18'05 |
| Rank | Name | Team | Points | General |
| 1 | Daniel Moreno | Iberia - Communidad Valenciana | 20 | 93 |
| 2 | David Arroyo | Die Berg Komt Er | 9 | 59 |
| 3 | Markus Eibegger | Magna-Ryanair | 25 | 51 |
| 4 | Thomas Rohregger | Magna-Ryanair | 7 | 41 |
| 5 | Julián Rodas | MTN - World Bicycle Relief | 12 | 38 |
| 6 | Denis Menchov | FC Barcelona - Estrella Damm | 5 | 37 |
| 7 | Maky Roman | Mobil - Castrol Cycling | 0 | 36 |
| 8 | Francisco Anton Martin | Iberia - Communidad Valenciana | 0 | 33 |
| 9 | Eduardo Gonzalo | FC Barcelona - Estrella Damm | 0 | 29 |
| 10 | Samuel Sánchez Gonzalez | Iberia - Communidad Valenciana | 10 | 26 |
| 11 | Jorge Abreu | FC Barcelona - Estrella Damm | 0 | 26 |
| 12 | Alexey Lutsenko | MTN - World Bicycle Relief | 16 | 25 |
| 13 | Alexander Gottfried | Team WWE | 0 | 24 |
| 14 | Deiber Esquivel | Banco Nacional de Costa Rica | 1 | 23 |
| 15 | Juan Mora | Mobil - Castrol Cycling | 0 | 22 |
| 16 | Georgi Petrov Georgiev | Boeing-Vivacom ProCycling | 0 | 19 |
| 17 | Sebastian Salas | Alstom-RBC | 0 | 18 |
| 18 | Joseph Dombrowski | Team WWE | 0 | 16 |
| 19 | Stefan Ihlenfeldt | MTN - World Bicycle Relief | 0 | 16 |
| 20 | Fabricio Ferrari | Mobil - Castrol Cycling | 0 | 16 |
| 21 | Bram Tankink | Team WWE | 0 | 16 |
| 22 | Alex Ciocan | Mobil - Castrol Cycling | 0 | 16 |
| 23 | Jonathan Tiernan-Locke | Boeing-Vivacom ProCycling | 0 | 15 |
| 24 | Sylvain Calzati | FC Barcelona - Estrella Damm | 6 | 14 |
| 25 | Antton Ibarguren | Die Berg Komt Er | 14 | 14 |
| 26 | Stefan Hristov | Boeing-Vivacom ProCycling | 0 | 14 |
| 27 | Hayden Roulston | Team WWE | 14 | 14 |
| 28 | Marco Salas | Banco Nacional de Costa Rica | 2 | 12 |
| 29 | Ryan Roth | Alstom-RBC | 0 | 12 |
| 30 | Guillaume Boivin | Alstom-RBC | 12 | 12 |
| 31 | Antonio Bucciero | Boeing-Vivacom ProCycling | 10 | 12 |
| 32 | Juan Pablo Valencia | Iberia - Communidad Valenciana | 0 | 8 |
| 33 | Kevin De Weert | Die Berg Komt Er | 8 | 8 |
| 34 | Jose Luis Cano | Banco Nacional de Costa Rica | 0 | 8 |
| 35 | Emanuele Rizza | Die Berg Komt Er | 0 | 8 |
| 36 | David De la Cruz | FC Barcelona - Estrella Damm | 0 | 7 |
| 37 | Pierre-Henri Lecuisinier | Alstom-RBC | 0 | 7 |
| 38 | César Rojas Villegas | Banco Nacional de Costa Rica | 0 | 4 |
| 39 | Tyron Giogieri | Die Berg Komt Er | 4 | 4 |
| 40 | Justo Mayo | Team WWE | 0 | 4 |
| 41 | Andrii Bratashcuk | Die Berg Komt Er | 3 | 3 |
| 42 | Carl Naibo | Magna-Ryanair | 0 | 2 |
| 43 | David Boily | Alstom-RBC | 0 | 2 |
| 44 | Laurent Didier | Team WWE | 0 | 2 |
| Rank | Name | Team | Mountain | General |
| 1 | Antonio Bucciero | Boeing-Vivacom ProCycling | 32 | 32 |
| 2 | Jorge Abreu | FC Barcelona - Estrella Damm | 0 | 30 |
| 3 | Mikel Astarloza | Team WWE | 14 | 26 |
| 4 | Juan Mora | Mobil - Castrol Cycling | 0 | 24 |
| 5 | Stefan Ihlenfeldt | MTN - World Bicycle Relief | 0 | 22 |
| 6 | David Arroyo | Die Berg Komt Er | 5 | 21 |
| 7 | Guillaume Boivin | Alstom-RBC | 20 | 20 |
| 8 | Bram Tankink | Team WWE | 0 | 20 |
| 9 | Hayden Roulston | Team WWE | 18 | 18 |
| 10 | Ryan Roth | Alstom-RBC | 0 | 16 |
| 11 | Antton Ibarguren | Die Berg Komt Er | 14 | 14 |
| 12 | Maky Roman | Mobil - Castrol Cycling | 0 | 12 |
| 13 | Pierre-Henri Lecuisinier | Alstom-RBC | 12 | 12 |
| 14 | Tyron Giogieri | Die Berg Komt Er | 8 | 12 |
| 15 | Lawson Craddock | Mobil - Castrol Cycling | 0 | 12 |
| 16 | Denis Menchov | FC Barcelona - Estrella Damm | 0 | 10 |
| 17 | Kevin De Weert | Die Berg Komt Er | 8 | 10 |
| 18 | Clement Chevrier | Die Berg Komt Er | 8 | 10 |
| 19 | Sebastian Salas | Alstom-RBC | 0 | 8 |
| 20 | Johan Esteban Chaves | Iberia - Communidad Valenciana | 0 | 8 |
| 21 | Javier Chacon | Iberia - Communidad Valenciana | 0 | 8 |
| 22 | Stefan Hristov | Boeing-Vivacom ProCycling | 0 | 8 |
| 23 | Justo Mayo | Team WWE | 0 | 8 |
| 24 | Joseph Dombrowski | Team WWE | 0 | 6 |
| 25 | Samuel Sánchez Gonzalez | Iberia - Communidad Valenciana | 4 | 6 |
| 26 | Bernardo Colex | Banco Nacional de Costa Rica | 0 | 6 |
| 27 | Emanuele Rizza | Die Berg Komt Er | 6 | 6 |
| 28 | Carl Naibo | Magna-Ryanair | 0 | 4 |
| 29 | Andrii Bratashcuk | Die Berg Komt Er | 0 | 4 |
| 30 | Sylvain Calzati | FC Barcelona - Estrella Damm | 3 | 3 |
| 31 | Daniel Moreno | Iberia - Communidad Valenciana | 2 | 2 |
| 32 | César Rojas Villegas | Banco Nacional de Costa Rica | 0 | 2 |
| 33 | James Lewis Perry | MTN - World Bicycle Relief | 0 | 2 |
| 34 | Markus Eibegger | Magna-Ryanair | 1 | 1 |