| 1 | Deiber Esquivel | Banco Nacional de Costa Rica | 5h47'08 |
| 2 | Daniel Moreno | Iberia - Communidad Valenciana | + 55 |
| 3 | Hossein Alizadeh | Sauber Petronas Racing | s.t. |
| 4 | Julián Rodas | MTN - World Bicycle Relief | s.t. |
| 5 | Carl Naibo | Magna-Ryanair | s.t. |
| 6 | Alexander Schrangl | Magna-Ryanair | s.t. |
| 7 | Francisco Colorado | Boeing-Vivacom ProCycling | s.t. |
| 8 | Brice Feillu | Risa - Ergon Cycling Team | s.t. |
| 9 | Edwin Parra Bustamante | Boeing-Vivacom ProCycling | s.t. |
| 10 | César Rojas Villegas | Banco Nacional de Costa Rica | s.t. |
| 11 | Sergey Rudaskov | Ekspla-Cision Cycling Team | s.t. |
| 12 | Denis Menchov | FC Barcelona - Estrella Damm | s.t. |
| 13 | Ricardo Mestre | Team Privatbank | s.t. |
| 14 | Nariyuki Masuda | Japanese - Korean Cycling Project | s.t. |
| 15 | Francisco Perez Sanchez | Iberia - Communidad Valenciana | s.t. |
| 16 | Andreas Landa | Evian-MIAT | s.t. |
| 17 | Ying Hon Yeung | PFG-Armavia | s.t. |
| 18 | Amir Mustafa Rusli | Sauber Petronas Racing | s.t. |
| 19 | Diego Gallego | Iberia - Communidad Valenciana | s.t. |
| 20 | Evgeny Bakhin | PFG-Armavia | s.t. |
| 21 | Cayetano Sarmiento | Evian-MIAT | s.t. |
| 22 | Luis Fernández Oliveira | Iberia - Communidad Valenciana | s.t. |
| 23 | Marco Salas | Banco Nacional de Costa Rica | s.t. |
| 24 | Eduardo Gonzalo | FC Barcelona - Estrella Damm | s.t. |
| 25 | Sylvain Calzati | FC Barcelona - Estrella Damm | s.t. |
| 26 | Markus Eibegger | Magna-Ryanair | + 3'28 |
| 27 | Dominik Hrinkow | Magna-Ryanair | s.t. |
| 28 | Joon Yong Seo | Japanese - Korean Cycling Project | + 4'04 |
| 29 | Oleksandr Polivoda | Team Privatbank | + 6'45 |
| 30 | Daniel Ricardo Diaz | Evian-MIAT | s.t. |
| 31 | Louis Meintjes | MTN - World Bicycle Relief | s.t. |
| 32 | David De la Cruz | FC Barcelona - Estrella Damm | s.t. |
| 33 | Hichem Chaabane | PFG-Armavia | s.t. |
| 34 | Jorge Abreu | FC Barcelona - Estrella Damm | s.t. |
| 35 | Charalampas Kastrantas | Evian-MIAT | s.t. |
| 36 | Romain Bardet | Evian-MIAT | s.t. |
| 37 | Craig Lewis | MTN - World Bicycle Relief | s.t. |
| 38 | Jordi Simon | FC Barcelona - Estrella Damm | s.t. |
| 39 | Francisco Anton Martin | Iberia - Communidad Valenciana | + 10'01 |
| 40 | Kristian Dyrnes | Risa - Ergon Cycling Team | s.t. |
| 41 | Michael Vink | Team Cadbury - Schweppes | s.t. |
| 42 | Jonathan Tiernan-Locke | Boeing-Vivacom ProCycling | s.t. |
| 43 | David Bartl | FC Barcelona - Estrella Damm | s.t. |
| 44 | Javier Chacon | Iberia - Communidad Valenciana | s.t. |
| 45 | Johan Fredrik Ziesler | Risa - Ergon Cycling Team | + 11'16 |
| 46 | Andrei Krasilnikau | Ekspla-Cision Cycling Team | s.t. |
| 47 | Bernardo Colex | Banco Nacional de Costa Rica | s.t. |
| 48 | Greogry Hugentobler | Sauber Petronas Racing | s.t. |
| 49 | Christian Mager | MTN - World Bicycle Relief | s.t. |
| 50 | Ingus Eislers | Ekspla-Cision Cycling Team | s.t. |
| 51 | Zico Waeytens | Magna-Ryanair | + 12'58 |
| 52 | Alireza Ashgarzadeh | Sauber Petronas Racing | s.t. |
| 53 | Marco Alexandre Ferreira Cunha | Team Privatbank | s.t. |
| 54 | Aleksander Aleksiev | Boeing-Vivacom ProCycling | + 14'24 |
| 55 | Giacomo Scarponi | Sauber Petronas Racing | s.t. |
| 56 | Volodymyr Dzhus | Team Privatbank | s.t. |
| 57 | Michal Kolar | Magna-Ryanair | s.t. |
| 58 | Maxime Daniel | Evian-MIAT | + 16'24 |
| 59 | Alexander Porsev | Ekspla-Cision Cycling Team | s.t. |
| 60 | Gabriel Chavanne | Sauber Petronas Racing | s.t. |
| 61 | Sondre Holst Enger | Risa - Ergon Cycling Team | s.t. |
| 62 | Tyler Day | MTN - World Bicycle Relief | s.t. |
| 63 | Aleksei Saramotins | Ekspla-Cision Cycling Team | s.t. |
| 64 | Will Routley | Boeing-Vivacom ProCycling | s.t. |
| 65 | Amadou Bakari | Boeing-Vivacom ProCycling | s.t. |
| 66 | Philip Lindau | Ekspla-Cision Cycling Team | s.t. |
| 67 | Damien Howson | Risa - Ergon Cycling Team | s.t. |
| 68 | Tsgabu Gebremaryam Grmay | PFG-Armavia | + 18'54 |
| 69 | Vitaliy Buts | Team Privatbank | s.t. |
| 70 | Oleksandr Golovash | Team Privatbank | s.t. |
| 71 | Ahmed Ahmed | Boeing-Vivacom ProCycling | s.t. |
| 72 | Dadi Suryadi | PFG-Armavia | s.t. |
| 73 | Sho Hatsuyama | Japanese - Korean Cycling Project | + 19'22 |
| 74 | Danilo Di Luca | Japanese - Korean Cycling Project | s.t. |
| 75 | Henry Raabe | Banco Nacional de Costa Rica | s.t. |
| 76 | Gyung Gu Jang | Japanese - Korean Cycling Project | + 21'17 |
| 77 | Mattia Gavazzi | Ekspla-Cision Cycling Team | s.t. |
| 78 | Mahdi Sohrabi | PFG-Armavia | s.t. |
| 79 | Mohammed Zamri Salleh | Sauber Petronas Racing | s.t. |
| 80 | Sebastian Lander | Risa - Ergon Cycling Team | s.t. |
| 81 | Heiko Redecker | MTN - World Bicycle Relief | s.t. |
| 82 | Aaron Gate | Team Cadbury - Schweppes | s.t. |
| 83 | Jimmy Pranata | PFG-Armavia | + 22'06 |
| 84 | Chan Jae Jang | Japanese - Korean Cycling Project | + 24'03 |
| 85 | Marco Guillén | Banco Nacional de Costa Rica | s.t. |
| 86 | Allan Morales | Banco Nacional de Costa Rica | s.t. |
| 87 | Cherif Abdallah | MTN - World Bicycle Relief | s.t. |
| 88 | Arturs Ansons | Team Privatbank | s.t. |
| 89 | Isaac Speirs | Magna-Ryanair | s.t. |
| 90 | Saulo Lay | Iberia - Communidad Valenciana | s.t. |
| 91 | Sam Harrison | Team Cadbury - Schweppes | s.t. |
| 92 | Mark Renshaw | Team Cadbury - Schweppes | s.t. |
| 93 | Vegard Breen | Risa - Ergon Cycling Team | s.t. |
| 94 | Russell Downing | Control Team | s.t. |
| 95 | Julio Alberto Perez Cuapio | Control Team | s.t. |
| 96 | Clinton Avery | Team Cadbury - Schweppes | + 26'56 |
| 97 | Jean-Patrick Nazon | Control Team | s.t. |
| 98 | Cadel Evans | Control Team | s.t. |
| 99 | Gerben Löwik | Control Team | s.t. |
| 100 | Robert Hunter | Control Team | s.t. |
| 101 | Kosuke Makino | Japanese - Korean Cycling Project | + 29'26 |
| 102 | Simon Gaywood | Team Cadbury - Schweppes | s.t. |
| 103 | Thomas Murray | Team Cadbury - Schweppes | + 31'30 |
| 104 | Adrien Petit | Evian-MIAT | s.t. |
| 1 | Deiber Esquivel | Banco Nacional de Costa Rica | 9h39'04 |
| 2 | Daniel Moreno | Iberia - Communidad Valenciana | + 1'03 |
| 3 | Hossein Alizadeh | Sauber Petronas Racing | + 1'07 |
| 4 | Brice Feillu | Risa - Ergon Cycling Team | + 1'15 |
| 5 | Julián Rodas | MTN - World Bicycle Relief | s.t. |
| 6 | Diego Gallego | Iberia - Communidad Valenciana | s.t. |
| 7 | Edwin Parra Bustamante | Boeing-Vivacom ProCycling | s.t. |
| 8 | César Rojas Villegas | Banco Nacional de Costa Rica | s.t. |
| 9 | Eduardo Gonzalo | FC Barcelona - Estrella Damm | s.t. |
| 10 | Nariyuki Masuda | Japanese - Korean Cycling Project | s.t. |
| 11 | Denis Menchov | FC Barcelona - Estrella Damm | s.t. |
| 12 | Sylvain Calzati | FC Barcelona - Estrella Damm | s.t. |
| 13 | Ricardo Mestre | Team Privatbank | s.t. |
| 14 | Luis Fernández Oliveira | Iberia - Communidad Valenciana | s.t. |
| 15 | Francisco Perez Sanchez | Iberia - Communidad Valenciana | s.t. |
| 16 | Marco Salas | Banco Nacional de Costa Rica | s.t. |
| 17 | Alexander Schrangl | Magna-Ryanair | s.t. |
| 18 | Carl Naibo | Magna-Ryanair | s.t. |
| 19 | Andreas Landa | Evian-MIAT | s.t. |
| 20 | Sergey Rudaskov | Ekspla-Cision Cycling Team | s.t. |
| 21 | Francisco Colorado | Boeing-Vivacom ProCycling | s.t. |
| 22 | Cayetano Sarmiento | Evian-MIAT | s.t. |
| 23 | Ying Hon Yeung | PFG-Armavia | s.t. |
| 24 | Evgeny Bakhin | PFG-Armavia | s.t. |
| 25 | Amir Mustafa Rusli | Sauber Petronas Racing | s.t. |
| 26 | Dominik Hrinkow | Magna-Ryanair | + 3'48 |
| 27 | Markus Eibegger | Magna-Ryanair | s.t. |
| 28 | Joon Yong Seo | Japanese - Korean Cycling Project | + 4'24 |
| 29 | Oleksandr Polivoda | Team Privatbank | + 6'45 |
| 30 | Charalampas Kastrantas | Evian-MIAT | + 6'53 |
| 31 | Daniel Ricardo Diaz | Evian-MIAT | + 7'05 |
| 32 | David De la Cruz | FC Barcelona - Estrella Damm | s.t. |
| 33 | Louis Meintjes | MTN - World Bicycle Relief | s.t. |
| 34 | Jorge Abreu | FC Barcelona - Estrella Damm | s.t. |
| 35 | Craig Lewis | MTN - World Bicycle Relief | s.t. |
| 36 | Romain Bardet | Evian-MIAT | s.t. |
| 37 | Jordi Simon | FC Barcelona - Estrella Damm | s.t. |
| 38 | Hichem Chaabane | PFG-Armavia | s.t. |
| 39 | Michael Vink | Team Cadbury - Schweppes | + 10'11 |
| 40 | Francisco Anton Martin | Iberia - Communidad Valenciana | + 10'21 |
| 41 | Jonathan Tiernan-Locke | Boeing-Vivacom ProCycling | s.t. |
| 42 | Kristian Dyrnes | Risa - Ergon Cycling Team | s.t. |
| 43 | David Bartl | FC Barcelona - Estrella Damm | s.t. |
| 44 | Javier Chacon | Iberia - Communidad Valenciana | s.t. |
| 45 | Johan Fredrik Ziesler | Risa - Ergon Cycling Team | + 11'36 |
| 46 | Christian Mager | MTN - World Bicycle Relief | s.t. |
| 47 | Andrei Krasilnikau | Ekspla-Cision Cycling Team | s.t. |
| 48 | Greogry Hugentobler | Sauber Petronas Racing | s.t. |
| 49 | Ingus Eislers | Ekspla-Cision Cycling Team | s.t. |
| 50 | Marco Alexandre Ferreira Cunha | Team Privatbank | + 13'18 |
| 51 | Alireza Ashgarzadeh | Sauber Petronas Racing | s.t. |
| 52 | Zico Waeytens | Magna-Ryanair | s.t. |
| 53 | Giacomo Scarponi | Sauber Petronas Racing | + 14'42 |
| 54 | Volodymyr Dzhus | Team Privatbank | + 14'44 |
| 55 | Aleksander Aleksiev | Boeing-Vivacom ProCycling | s.t. |
| 56 | Michal Kolar | Magna-Ryanair | s.t. |
| 57 | Aleksei Saramotins | Ekspla-Cision Cycling Team | + 16'38 |
| 58 | Will Routley | Boeing-Vivacom ProCycling | + 16'40 |
| 59 | Alexander Porsev | Ekspla-Cision Cycling Team | + 16'44 |
| 60 | Tyler Day | MTN - World Bicycle Relief | s.t. |
| 61 | Gabriel Chavanne | Sauber Petronas Racing | s.t. |
| 62 | Sondre Holst Enger | Risa - Ergon Cycling Team | s.t. |
| 63 | Philip Lindau | Ekspla-Cision Cycling Team | s.t. |
| 64 | Maxime Daniel | Evian-MIAT | s.t. |
| 65 | Damien Howson | Risa - Ergon Cycling Team | s.t. |
| 66 | Amadou Bakari | Boeing-Vivacom ProCycling | s.t. |
| 67 | Bernardo Colex | Banco Nacional de Costa Rica | + 17'55 |
| 68 | Vitaliy Buts | Team Privatbank | + 19'14 |
| 69 | Dadi Suryadi | PFG-Armavia | s.t. |
| 70 | Tsgabu Gebremaryam Grmay | PFG-Armavia | s.t. |
| 71 | Oleksandr Golovash | Team Privatbank | s.t. |
| 72 | Ahmed Ahmed | Boeing-Vivacom ProCycling | s.t. |
| 73 | Danilo Di Luca | Japanese - Korean Cycling Project | + 19'42 |
| 74 | Sho Hatsuyama | Japanese - Korean Cycling Project | s.t. |
| 75 | Henry Raabe | Banco Nacional de Costa Rica | s.t. |
| 76 | Mahdi Sohrabi | PFG-Armavia | + 21'25 |
| 77 | Mohammed Zamri Salleh | Sauber Petronas Racing | + 21'37 |
| 78 | Mattia Gavazzi | Ekspla-Cision Cycling Team | s.t. |
| 79 | Heiko Redecker | MTN - World Bicycle Relief | s.t. |
| 80 | Aaron Gate | Team Cadbury - Schweppes | s.t. |
| 81 | Sebastian Lander | Risa - Ergon Cycling Team | s.t. |
| 82 | Gyung Gu Jang | Japanese - Korean Cycling Project | s.t. |
| 83 | Jimmy Pranata | PFG-Armavia | + 22'26 |
| 84 | Vegard Breen | Risa - Ergon Cycling Team | + 24'09 |
| 85 | Isaac Speirs | Magna-Ryanair | + 24'15 |
| 86 | Cherif Abdallah | MTN - World Bicycle Relief | + 24'23 |
| 87 | Marco Guillén | Banco Nacional de Costa Rica | s.t. |
| 88 | Chan Jae Jang | Japanese - Korean Cycling Project | s.t. |
| 89 | Saulo Lay | Iberia - Communidad Valenciana | s.t. |
| 90 | Mark Renshaw | Team Cadbury - Schweppes | s.t. |
| 91 | Allan Morales | Banco Nacional de Costa Rica | s.t. |
| 92 | Arturs Ansons | Team Privatbank | s.t. |
| 93 | Sam Harrison | Team Cadbury - Schweppes | s.t. |
| 94 | Russell Downing | Control Team | s.t. |
| 95 | Clinton Avery | Team Cadbury - Schweppes | + 27'16 |
| 96 | Simon Gaywood | Team Cadbury - Schweppes | + 29'46 |
| 97 | Kosuke Makino | Japanese - Korean Cycling Project | s.t. |
| 98 | Julio Alberto Perez Cuapio | Control Team | + 30'42 |
| 99 | Adrien Petit | Evian-MIAT | + 31'50 |
| 100 | Thomas Murray | Team Cadbury - Schweppes | s.t. |